Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015788661.1_cds_XP_016474512.1_625
CDS Infomation

[gene=LOC107796246] [db_xref=GeneID:107796246] [protein=indole-3-acetic acid-amido synthetase GH3.6-like] [protein_id=XP_016474512.1] [location=complement(join(21511..22097,22390..23318,23489..23823))] [gbkey=CDS]
Sequence

ATGGAAAGAACCATGTCTGAGGCACCAAACAGCCCAAAGAAAGCCACTGAATGTAGTATC
GCAGAGGACAACAAGAAGAATCTTCAGTTCATTGAAGAGGTCACAACCAACGTTGGCAAT
GTCCAAAGGAGAGTTCTTGCTGAAATCCTGTCGAGGAATGCCAATGTTGAGTACTTACAA
CGCCATAATCTCAATGGTCACACTGATAGAGAGACATTCAAAAAAGTCATACCTGCCATC
ACCTACGAAGATATTCAGCAAGATATCAACCGTATAGCACATGGTGATAAATCTCCAATC
TTCTGCTCCCAGCCCATCTCTGAATTCTTGACAAGTTCTGGGACGTCTGGAGGGGAGAGA
AAACTGATGCCAACAATTCAGGAAGAGCTCGGGAGGAGATTACAGCTTCACGGCTTGATG
ATGTCTGTGATAAGTCAATTTGTTCCAGATTTGGAAAAGGGCAAAGGAATGTATTTCTTG
TCCATAAAGTCTGAAGCCAAGACTCCAGGAGGATTACCAGCTCGCCCTGTTTTAACAAGT
ATTTACAAGAGTCCTTATTTCAGTAACAGGCGTCTTAGCCCCTACGCAAACTACACTAGT
CCAGCTGAAACCATTCTCTGTCCAGACTCTTACCAAAACATGTATTCCCAAATGCTTTGT
GGCCTCTGCCAAAACAAAGAAGTCCTCCGGCTCGGCTCGTACTTTGCATCTGGCTTCATC
CGTGCCATCCGGTTCCTTGAAAAGCACTGGTCTCTACTTTGCAACGATATCCGAATGGGA
ACCATTAACACCCAAATTACAGATCTGTCAGTGAGAGAGGCAGTGATGAAAATCCTCAAA
CCTGACCCAGAGTTGGCTGATTTCATCGAGGCTGAATGCAGTAAAGATTCATGGAAAGGG
ATCATCACTAGGTTGTGGCCTAATACCAAGTATGTGGATGTTATTGTAACCGGAAGCATG
TCGCAGTATATACCAACCCTTGATTATTACAGCAATGGCCTCCCTCTTGTCTCTACCATG
TATGCTTCCTCCGAATGCCCCTTTGGAATCAACTTGAACCCCTTTTGTAAGCCCAGTGAA
GTCTCTTACACACTCATTCCCACCATGGGCTATTTTGAGTTCTCACCAATTCACAGAACC
AATGAAGTCCCCAATTCTATCTCCATGTCCGAGTCGCCTAATGAGAAAGAACAGCAACAA
TTGGTCGATTTGGTTGATGTCAAGATTGGCCAGGAGTACGAGCTTGTTGTATCCACATAT
TCTGGACTCTATAGATACAGGGTGGGTGATGTGCTTCGGGTTGCTGGATACAAGAACAAC
ACACCTCAGTTCACCTTCGTTTGTCGGGAAAATGTAATCTTGAGCATTGATTCCGACAAG
ACTGATGAAGTTGAGCTACAAAATGCAGTGGAAAATGCAGTGCGTGATCTGATGCCATTT
GATGCACATGTAACCGAGTACACCAGCTACGCTGATACTGCAACCATTCCCGGCCACTAT
GTCCTATTCTGGGAGCTCAGCATAAATGTCTCTACCTCGATTCCCCCTTCAGTCTTTGAA
GATTGTTGCCTCACTATTGAAGAGTCTTTAGACAGCGTCTACCGCCAGGGGCGTGCATCT
GACAAATCCATCGGGCCTCTGGAAATCAGGATAGTGGAAATTGGGACTTTTGACAAGCTC
ATGGACTACTGCGTTAGCTTAGGTGCTTCCATAGACCAATATAAGACACCTCGGTGTGTG
AAATTTGCACCCCATGTTGAGCTATTGAATTCGAGGGTCATGTCCAGCCACTTCAGTCAA
ACATGTCCAAATTGGGTTCCTGGCCACAGGCAATGGAACAACATGAATTGA

Peptide Sequence

PEP ID

XP_016474512.1
PEP Infomation

PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Nicotiana tabacum]
Sequence

MERTMSEAPNSPKKATECSIAEDNKKNLQFIEEVTTNVGNVQRRVLAEILSRNANVEYLQ
RHNLNGHTDRETFKKVIPAITYEDIQQDINRIAHGDKSPIFCSQPISEFLTSSGTSGGER
KLMPTIQEELGRRLQLHGLMMSVISQFVPDLEKGKGMYFLSIKSEAKTPGGLPARPVLTS
IYKSPYFSNRRLSPYANYTSPAETILCPDSYQNMYSQMLCGLCQNKEVLRLGSYFASGFI
RAIRFLEKHWSLLCNDIRMGTINTQITDLSVREAVMKILKPDPELADFIEAECSKDSWKG
IITRLWPNTKYVDVIVTGSMSQYIPTLDYYSNGLPLVSTMYASSECPFGINLNPFCKPSE
VSYTLIPTMGYFEFSPIHRTNEVPNSISMSESPNEKEQQQLVDLVDVKIGQEYELVVSTY
SGLYRYRVGDVLRVAGYKNNTPQFTFVCRENVILSIDSDKTDEVELQNAVENAVRDLMPF
DAHVTEYTSYADTATIPGHYVLFWELSINVSTSIPPSVFEDCCLTIEESLDSVYRQGRAS
DKSIGPLEIRIVEIGTFDKLMDYCVSLGASIDQYKTPRCVKFAPHVELLNSRVMSSHFSQ
TCPNWVPGHRQWNNMN

Transcript Sequence

Gene sequence data has not been registered.